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2011. 10. 1. Currently, there are several maize microarray platforms available, including an Affymetrix short oligonucleotide array,a Nimblegen 50-mer array,a 70-mer array from the University of Arizona Maize Oligonucleotide Array project and the 60-mer Agilent-016047 Maize 4 × 44 K microarray .

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An Expanded Maize Gene Expression Atlas based on RNA

previously published microarray-based gene atlas of maize (Zea mays L.) inbred B73 to now include 79 distinct replicated sam-ples that have been interrogated using RNA sequencing (RNA-seq). The current version of the atlas includes 50 original array-based gene atlas

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(PDF) Allelic genome structural variations in maize detected

After Affymetrix® quality control, we successfully genotyped 86,648 polymorphic InDels (82% of all InDels interrogated by the array) on 445 maize DNA samples with 422,369 probes.

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High‐density SNP genotyping array for hexaploid wheat

used an array‐based platform to examine and validate over 81 000 putative SNPs in both tetraploid and hexaploid wheat, and were able to validate 56 388. SNPs derived from Ae. tauschii,the D genome donor of hexaploid wheat, were also included on their array, and of the approximately 4400 SNPs derived from this species, 796 (18%) were also polymorphic in a range of hexaploid wheat accessions (Wang et al

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Advances in Maize Genomics and Their Value for

The GeneChip Maize Genome Array manufactured by Affymetrix (affymetrix) is a commercial alternative to the public 70 mer array described above. This array contains 17 555 probe sets, which interrogate 14 850 maize transcripts representing 13 339 maize genes.

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An Expanded Maize Gene Expression Atlas based on RNA

This work characterized the global transcriptome of maize and found that a large amount of genes are expressed in all tissues (∼45%), while a small but significant proportion (2.7%) exhibit organ specific expression patterns; the utility of this dataset was highlighted by examining gene expression and organ specification of lignin biosynthesis genes in maize (Sekhon et al., 2011).

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Allelic genome structural variations in maize detected by

We used aCGH to investigate the presence of CNVs in maize by comparing the genome of 13 maize inbred lines to B73. Analysis of hybridization signal ratios of 60,472 60-mer oligonucleotide probes between inbreds in relation to their location in the reference genome (B73) allowed us to identify clusters of probes that deviated from the ratio expected for equal copy-numbers.

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An array of 60,000 antibodies for proteome-scale antibody

PETAL array screening using a proteome sample consisting of total protein extracts from maize seeds DAP3 and DAP17 produced a total of 12,427 binding mAbs. A selection of 1000 mAbs to probe DAP3 and DAP17 samples yielded 206 class I mAbs (single or predominant single band) and additional 129 class II mAbs (multiple bands) upon immunoblotting.

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